PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G236100.1
Common NameB456_010G236100, LOC105772948
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 397aa    MW: 43894.3 Da    PI: 4.6621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G236100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19123172255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Gorai.010G236100.1 123 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEALRIRG 172
                         69*******.**********954...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.05E-33123181No hitNo description
PROSITE profilePS5103224.553123180IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22123182IPR016177DNA-binding domain
SMARTSM003801.9E-37123186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-32123182IPR001471AP2/ERF domain
PfamPF008472.2E-12124172IPR001471AP2/ERF domain
PRINTSPR003671.2E-11124135IPR001471AP2/ERF domain
PRINTSPR003671.2E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MCGGAIISDF IPPARSRLVT ANYLWPDLKK SGSKKRSGRK HSKKPAVGFE DDFEADFQVF  60
KDEDSDVDDF DDDVDDVLAD VKSFAFSATE KPSPAVSHGS NSIKSVEFNG QAEKSAKRKR  120
KNQYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDAEALRI RGKKAKVNFP  180
DETPRTSPKN AAKMNSQKPL SGSNLSSVQS SLNPDFSYSN KHEQGYYDTM GFIEEKSLMD  240
QFAYADPVRA AVDDGLKPFA EPENSASYFN SDQGSNNFDS SDLVWGEQGA KTPEISSSLG  300
PTLEVHEFLD NANPTKKLKP SSNNVMPTGG DNMVKSLSDE LLAMDNHVNY FQTPFIDENW  360
DVSIDDFLNG DATQDGGNEM GFWSFDDFPS IDGGVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-22123180260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.28060.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8171340.0AY817134.1 Gossypium hirsutum putative ethylene responsive element binding protein mRNA, complete cds.
GenBankKP7802010.0KP780201.1 Gossypium hirsutum C-repeat binding factor 18 (CBF18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449927.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
SwissprotQ9SSA88e-84RA212_ARATH; Ethylene-responsive transcription factor RAP2-12
TrEMBLA0A0D2VEF20.0A0A0D2VEF2_G
STRINGVIT_09s0002g00470.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.37e-76related to AP2 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]